NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1000862

Scaffold Ga0272424_1000862


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1000862 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60816
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (16.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021452Metagenome218Y
F050043Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100086234F008735N/AVSLLIYDESXLDINDLDSMKEIMIIIHVHALYQTLLSCIQSIFVFLILRYVKKLLEFRSNEGSNRVCREMNDKKRLIVQDLCNDLSYHHKKLRIQLYINXRTENDEXKXDDNIMLLNLILKLTHYTKSLDXIFDHTLSELFDSTLIVDQEIVRXLHLSKRVTRRDFNVXKRCRECKSFIMSKTRLN
Ga0272424_100086238F050043N/AMIKIXSXLKKDEVEENEKLRETERAINKTTIVIHSCLHFIISITSFTXNVNNVYALFTRHHCCHLHQLYITYTIYTVIYTHYNXRXIIIQSKVSLFLVFSQRFEDFYQELLERINECASLFIRVNKDINYXDXEXTHLEKKTIVMMNXYIKTKVKDXVEDQIXVSSETLXLCQDII
Ga0272424_10008624F021452N/AMFDNSFNFKSFTVDVILNSLKKIFKFFTLINIKVIDITFIDESLMSELCECFDIQSILLFKSKLIXSYNETSDQKSITYALYTSIMIQKHKNEMMFLLITHLNQHKIIIENLXLKRNQILINSTNN
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