NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1000962

Scaffold Ga0272424_1000962


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1000962 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57065
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F010214Metagenome306Y
F019260Metagenome230Y
F024448Metagenome205Y
F065269Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100096210F010214GAGMKVSVLLDYDASSLLCSSLTIFYTTMSRFDSXFKDERRFLCTRDAHDCNVCKAVFFYSMIVIHXAEKYVMKERCTRXEDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFSRE
Ga0272424_100096218F024448N/AMSMSNDSFASESLTIKCVLSSNKINYSLKSLIDIEVADYSFIDEVIVQIVCNQLQIESLTLIKAKSIQEFNDHYVKKLITHVIYSNLTVQDHMIDTAFMLITXLNQHQMILEKTXMNKINLVIDMQINFLQFSNFNSCYECVRIDSVMILVLSDSVF
Ga0272424_100096219F005901N/ALHSYISIDELFEHLKEIYNELNKNXKCHCKYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNTLSICLKNFTSLTCLRIFLQDVNSKQXVNYQLCSERCTVIVKVTVISDKCVTSLSVTTLIINYVKLIISFIFKSARLSIICYICKIFNHLLKNCFQLNKIDTSAFYAFILCLHEIIISKNRKNEKMSSFEDSKTKN
Ga0272424_100096236F065269N/AMTRSSKSASIAHYELQNARRKSLLSQNQTASEEKNMNVLSNIKEKNMNTLLFNHEMIKISISTELNA
Ga0272424_10009625F019260N/AMSQFKNISNILSSTFLISINELITVTQFQTHVNNVFEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIKLKQSQINNEILSEMIQELKSISRINIKSEKYLNSELYIEEXENKLNQFIFKLISKLKLNANCYSTLESRLLYEYSCLSKNAVAQTLSHMIAQHDKLVMIEQLVILLRQVFDDSDKQEIAQQFISALRMXNCIFIEYLFDFQQHIDAIKYNVVTXKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSXYCVIVQNLFKSKAVIHSVSVIFTVLAYLVKYVTFSIDLKATISSLRNFMNLSIINMKKQDSLILKKHQHRMINHLYLYCNKFEHQTAICNSKLKI
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