NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1001024

Scaffold Ga0272424_1001024


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1001024 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55286
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (13.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F009377Metagenome318Y
F036035Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100102446F009377N/AMTRSTESKSVSIAHYDFXNVKRKSLLSQNXTASEEEDMNALSNTEEKNINTLLFDHEMIKISISTELNAXINTHEADDIVVFIKYICQQHDIEIKIHNDMIQMLEDVNEINIMLKAAQMRLQKEMRNKNVIIHHLETASSXQSTSIFEDCFLKLIKLLNFSLFEDSLQNVNNXLSRMQNKLKANKNHFFIEELKIVYIESRVSEAAIKHIASRMQNIFLNSFLEVKEVLLIIDKMYNNFNHCHMTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLNNLQHKISSDL
Ga0272424_100102455F005901N/ALHSYISIYKLLKHLEEIYENQNKNQKCRCKYNVLRQADKLFNVFYFNFMKLFSYLDYDDRTLMNDLQNKINNRLQNALSVCSEDFASLHHFKSFLQEVNNKQRANYQLRSEQRTLIVKIIIVSDKRVTFLSAVMTSIIKYVKSTIFSIFESVRSFIVCYICKTLDHLFKNCSQNKINILTSCAFILHLHEIIILKNKKNEKMSSSSENSEAKN
Ga0272424_10010249F036035N/AMKDDATXRKHHELEKASRNHERDNSDHSNDILDKHTELISDCDVIKESNERERK
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