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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1001462 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44760 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (20.51%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F024448 | Metagenome | 205 | Y |
| F036035 | Metagenome | 170 | Y |
| F051591 | Metagenome | 143 | Y |
| F064252 | Metagenome | 128 | Y |
| F104134 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100146210 | F064252 | GAG | MTIDTQEETIIELQEKVLNLKKRQRSVNQSRSXQSTKSXTSIKNYTXRESFTLFNNDHHKSFKFLNSSVFIDEDESTXDSXRVKMNDKLQTNVNHFDNENICIVYVISRLENDAAEHIFTXRXHDALHSYISINELFEHLKEIYNELNRNRKCHREYNALRQADKSFNVFYFDFMKLFNYLNYDNCILMNDLQNKINNRLQNALSVCSKNFTSLIRLRIFLQSVNNKQRVNYQLRSKHHTVIVTVIIKVMIVSDKRTATSLSVTTSIIDYIKSIIFFTSESARSFIICYTCKISSHLLKNCSQNKINTSAS |
| Ga0272424_100146211 | F000597 | N/A | MLNDSFTSESLTTECVLSNNEINYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIQEFDNHYAKKLITHVIYSNLTVQDHMIDTASMLITQLD |
| Ga0272424_100146219 | F104134 | N/A | MSLLLSLRSNMIRFLXPVDTSVILCRICSIDFFCISFISLLFIILIMTSHFLRSDNKSSLRRCFLVAISSLVMFAHDVIFIERRVFFCVCNCLLSSXTDVFSFCTFFAMNAFXFAXCFSSELSQRHXISFNAISFHEXSLFFSFSNVDIFISRSIILATFFSSSHEHFDLASLFSCNESMSLAIIFESALLQFMQFIVIQSSSRFTLPCL |
| Ga0272424_100146221 | F036035 | N/A | MKDRMKDNAMQKEHHELEKASRNHERDDSNHLNDTLDKHIESISDCDIIKESDEREKK |
| Ga0272424_100146233 | F024448 | GAGG | VTFIKDAMKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDTEAADYSFIDEVIAQIVYDQLQIKLLTLIKAKSIQEFNDYYAKKLITYVIYSNLTIQDHTVNIAFILITQLEQHQIILEKTXMNKTDLIIDMQIDFLQFSNFNSRLTILFLSERMTLKQKSLTFTHILKRSFTFVTSQSSQKSFSFN |
| Ga0272424_100146239 | F051591 | N/A | MLDAIALYFRYRSSRVTSLRIVTTDLDLLSCASRKGKTDSDLIRNALLLXINVVLCATFKHKRVRFQFLRQYAVFCVVLKSLDDLFFSCEFALXFINQITVXIDDSFFCVDEFSFRRRFWPAXARKILIFDFXLAMQSSVKLLSRMRACFDHTIVLYNLSIDLIYHLTILEIFLRFSSVLDMFVIFSLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |