NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272424_1001488

Scaffold Ga0272424_1001488


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1001488 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44097
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (25.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024448Metagenome205Y
F028667Metagenome190Y
F033266Metagenome177Y
F038484Metagenome165Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10014881F024448N/AMKEMLISSTTSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTAFMLITXLDQHQMILEKTXMNKIDLVIDMRTDFLRFSNFTLNLKSIVLLTSNKTTTKQKSLTSTHILKRSFTI
Ga0272424_10014882F028667AGGALNYFYQNTSSNLLKFTQIYQTNHSIFSQSIYLYLQFLTMARDSESVESRTARLLRSTANRXVFLISFNASAKPQNAAISXDINTDQQLRQXAIDQSDEIIKMLIELRDQRDMTLKLNEQXIDVQVNHIKRLDELEINQMTIDTQEETIIELREKVLSLKKKQRSANQSRSRQSTESRVSTKSLPRQSIENHTRRESFTLFNNDHHKSFKFLNSSVFIDEDESTXDSXRIKMNDKLQTNVDHFDNENTCIVYVISRLEGDAAEHIFAXRRHDASHSYILIYELFEHLKEIYDELNRNRKCRRKYNALRQTDKFFNVFYFNFIKLFSYLDYDDRTLMNDLQNKINNRLQNALSVCFEDFASLHRLKTFLQDVNNKQRVNYQLRSQLRTVTVKVIVVPDKHAATSLSVTTSIIDYVKSIFSSISESARSSIICYTCKISSHLFKNCSQNKINTSAFHAFILRLHEIVISKNKKNEKMSFFKDSEAKN
Ga0272424_100148826F033266N/AMSSHSFTEEHFEEFQNRFSQISDADSLKSRMKSSSAASFIHEDDESFIETIILFMFYEIXKTXSLALDEETNXLYKLNKQHEDEIKELKTKLQAKENTSSDFIYSERSRFQKIFNSSLFTDEKNFT
Ga0272424_100148830F086375N/AMFTLFINSKSITSRNRDENWFNEIKEHYKRQNNDHVALFKRLHKLKLFNVXKEANEINKAAMKDNVRDKVEQEXKNKDIHDNASQ
Ga0272424_10014888F038484N/AMRSILMCIARMLSAFXKSSRIFIILLLKCNLCVEIALTSATHSLYFSHHXFHXFLXYCFIAMLLLVKIIVKKKMCHLHLNCIFASSXMKTFRSTIFLMTSEQEMMQLTFVKXVHISLYACLISCIQSLIQLCSVILFCNMFKXTCSELMYVSVSRVSMFTLLNTSATXCRIXFXSVSNLHSLLNSSFFLSRXCQTDALNAISDLTTAEYTCFAFVKITSHVKTSRQLSVSILITXFIFIYXRCALHCSFMFSCIFRTRTSDFNLITELFICMLIIMLNLFNFLVKCVSLYFSDANVVSXVQAHFMQTLCALLNVLQISSVNLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.