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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1001597 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42609 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (8.51%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011463 | Metagenome | 290 | Y |
| F019260 | Metagenome | 230 | Y |
| F036035 | Metagenome | 170 | Y |
| F038008 | Metagenome | 166 | Y |
| F061400 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_10015971 | F011463 | N/A | HRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKVRIFYHLHLSVSMKHLHLMFSLKLLRLYSEDSLSEQHAESLRLIIIDDNNDEHXKIDDILNFRRYXGRIQYKIKXKDLDRNNEXYYVNKDEFDDFKKVLNEFHALYSRKSR |
| Ga0272424_10015972 | F038008 | N/A | MTLXSESSRIVIVANKKMSISQHYLDTFTLKQKVYSNDSNNRENVTMITMRTNXKLNKRLKKSTLVITHHEELKELIARAKHLADVATENQKCHEKIYKVYSDNQTSLKTVKAMISTKDQTRLQ |
| Ga0272424_100159723 | F019260 | N/A | MIQELKSMSRINIKSEKYSNSELYIKEXKNKLNQFIFKLISKLKLNMNHYSTFKFRLLYEYSRLSRNAVAQALSHMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNCIFIEYLFDFQQHIDAIEYDVVTXKFNLKNELFSELKALLIQINVSSLNYEQLIIKCQQLNSRYHITVQNLFKSKAVIHSVFVIFTVFAYLVKYATLSTDLKATISSLRNFMNLLIINMKKXDSLTLEKHQHCMINHLCLYCDKSEHQTAICNSKLKIQLQVISLFVFAIFINNLAFNTSLILKKA |
| Ga0272424_100159740 | F061400 | N/A | MNLNSEKTVIKAXNIYCREEDEDNAIDESDDSFKTDLQNVLCFINV |
| Ga0272424_10015978 | F036035 | N/A | MKDDAIXREHHELKKVSRNHEYDNSNHSNNILNKHIETISDCDIIKELNEREKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |