NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1001786

Scaffold Ga0272424_1001786


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1001786 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40161
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F041516Metagenome159Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100178632F094622N/ALKQKVYLNDNNSKDNVTVIVMKINXELNKRLKRLMLIITHHDELKELVAKAKHFADVVTANQEYYEKIYKVYNDSQTSLKTVKVMISTKD
Ga0272424_100178647F000597N/AMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIKAADYLFIDKVIAQIVCDQLQIESLTLIKAKLIQEFDNHYAKKLITHVIYLNLTVQDHMINTAFMLITRLNQH
Ga0272424_10017869F041516N/AMTQKVIHIHEAYNLSLKDYKIIYEKENLSNIEKTLHMLKESILVEDFNLHHFTXEESFYL
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