NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1001879

Scaffold Ga0272424_1001879


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1001879 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38849
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F036035Metagenome170Y
F041516Metagenome159Y
F051591Metagenome143Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100187926F005901AGAAGMNDKLIVNADQFNDEIIYIIYMMFRLENDVVKYIFARRCFNSSNLFTLIYELFDHLKEIYNELNKNRKSXREYNALRQVDKSFNIFYFNFMKLFSYLDYDDCTLMNNLQNKINNRLQNTLSVCSENFTSLTRLRIFLQSVNNKQRVNYQLRSERCTVIIKVTVVSNKRAATLLSVTTSIIDYIKFIISFISESARSFIICYTCKISSHLSKNCSQNKINTFAF
Ga0272424_10018793F036035N/AMKDDAMQREHHELEKASRNHECDNSNHLNDTLDKHTESISDYDVIKESNERKRK
Ga0272424_100187934F051591N/AMLDAIALYLMYQSSHVISLRIVTTDLNLLSCTLRKGKTDSDLIRNAVLLXNNVVLCVIFKRKRVXFRFLRQYTIFCAVLRLIDDLFFSYEFALXFINQITVXIDNSFFCVDELLFRRRFXSAXTXKISIFDFXLATQSSVKLLSQMRACFDRMIVLYNLSIDLIYHMLX
Ga0272424_10018794F094622N/ALKQKVYLNDNDSKNDVTMIMMKINXELNKRLKESTLIITHHDELKKLVAKAKHLADVATMNQEYHEKVYKVYSDNQTSLKTVKVMISTKNQTRLQQV
Ga0272424_10018799F041516N/AMIQKVIHIHEAYNSSFKDYKIIHEKENLSDIKKMLHMSKESIFVKNFNLHHFTXEESFYS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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