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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1001916 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38344 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (17.50%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F020121 | Metagenome | 225 | Y |
| F038009 | Metagenome | 166 | Y |
| F050043 | Metagenome | 145 | Y |
| F066295 | Metagenome | 126 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100191610 | F020121 | N/A | MLIAQIIYKFNVNLSRCSCFKYFVEDEVXLNACNLSIAYLVVKLNDHNINLFKIKHVFENNSLIIKLNLSAFMKIHSIFHVILLSHIASNSLLSQRQKSQELIIIKNNERFXYVNSILNFKHDKRYNSSLLKYYIDXKDHFSTXESFHLLNNCEQMLNEYHLVNSVVEESHVLSCVMFQCQCQEL |
| Ga0272424_100191612 | F050043 | N/A | LTFTFYDSFXALLHVHDSXSRSFTLMIQIYSKFVKSNHTMIKIXSXLKKDEVEENEKLRRTERAINKSTIIIHSCLCFIISTISFTXKINNVYVLSTRHHCCYLHQLHITYTIYNVIYMHYNXRXIIIQSKVSLFLIFSQRFEGFYRELLEXINECASSFIRVNKDINYXDXEXTHLEEKTIVMMNXHIKIRSETKVKNXVKDQI |
| Ga0272424_100191624 | F066295 | AGAAG | LKTRLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXKNXYKKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEIIQTRREHDCVNLYRIVDDFLKELAQLFNDSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLNYHKKQLITDLKDKIHSHFRFI |
| Ga0272424_10019163 | F089602 | N/A | MKDEXLNFIEILSEEDDNLSEIIDIALQTVNQQEIFHQKIFFLLIEEIVVVDKAICVLLQNFAKI |
| Ga0272424_10019164 | F001951 | GAG | MIIMKFRFIDSSRNKRERNEDTVKITVIKMMIFDFKKLLVDAEMFLTLMNETMMKMK |
| Ga0272424_10019165 | F038009 | GAG | MIKALNSQLNYVKLYKRLIELICLKNNRSSRKKRISTLNFXXVFLLNDLKNMTKNFLFQMRDKIKRDLFLVNELNISLLLISERKIILLLVSRXKTELLFVSELRTELLLASELSAELLLMSKXETELLLASELRTELLFASKLSAELLLVSNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |