NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1002203

Scaffold Ga0272424_1002203


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1002203 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35419
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021216Metagenome219Y
F021452Metagenome218Y
F041516Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100220316F021452N/AVTESNILIFCFISMSDDSFDFKSFTVNIILSSLEKIFRFLVLINTEVIDMTFIDESLMSKLCERFDIQSISLLKSKLIQLYNEISDXKLITYALYTLIMIQEHKNEIMSLLITHLDQHKIIIENLXLKRNQILVNSAND
Ga0272424_100220323F041516N/AMTQKVIHIHEAYNSSLRDHEVIHEKESLSNIKKMLYMLKECILVKDFNLHYFT
Ga0272424_100220332F021216N/AMKSRMKSNAMRREHHELKKTLRNHERSNNDHSNNTFNKHTELISSCDIIKESNEREKK
Ga0272424_100220334F009580N/AMICIQIFKRNLAQKLNFSYKQQDFFIYIDDITIVNVHDMQSEKLFIXAFFSDFAXMLQFAIVAQLSLVADFLDFKNDQSLILNNNNDKA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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