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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1002323 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34239 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (24.24%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F004755 | Metagenome | 424 | Y |
| F008115 | Metagenome | 338 | Y |
| F023763 | Metagenome | 208 | Y |
| F028368 | Metagenome | 191 | Y |
| F038008 | Metagenome | 166 | Y |
| F064254 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100232318 | F064254 | N/A | MQELYESVSFLFFLSFIXFFDDVTAXNXFNILIESIIXMIIIAALMIFKSFLKFMMFSSHCIAFHSTFHLKHVNKMCLIDIXSLSHSHVVIVISSTRLLCRNXLKSIFLVHSCINNALXDFAXFLCSCRCXYVIFDVRYQKXAALNFSFQTILHVYLIYFCMSINLVIISVRXCLISNKDNSYASSIILFAASFSSTSACSVTQCNFSVISXDXMFSCAV |
| Ga0272424_100232319 | F038008 | N/A | MNQSHFYIVTFXSESLKIVIVANKKMSIRQHNFHTFTSKQRVYLNDNNSRDDVTAITMKMNXELDKRLKRSTLIITHHDELKKLVAKMKHLADVATVNQECHKKIYKIYSDNKIFLKIVKVMTSTKDQTRLQRV |
| Ga0272424_100232326 | F000597 | N/A | MSSLNDLFASKSLTTECILSSNKISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTV |
| Ga0272424_10023233 | F004755 | GAG | LSYIHSRLFDDAAEITQARCKRDCVNLYRIVDDLLKKLAQLFNDLNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLNYHKKQLIADLKDKIHFHLRFIXVNQLVQSDFLKEIHFYLIHLNNDQRVIRKIKNKIKRVDDLSKTFFHKATVITQSVDHLKSDQLKSRDAILTNVKEADILVESCFICHKSGHSFKECFDXSTRINAVNNEYNRFDFNSNFDSKN |
| Ga0272424_10023234 | F028368 | N/A | LKENYFEKLFLIDTHLISQNQSFSLRSLIDSDSAVYTIIHSNLVNKVCEKLRIQPISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIVNINHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISFNSKHSSXLQSSLFSSIIQTKISMMLKQLVQEESFSIXSIDAASFKTLLNHSKKNKIKVFALFMMNINRKITYNTQCDLNALNVFSINEMTQNLKDIKAKLSLKYHEFLDVFNRV |
| Ga0272424_10023237 | F008115 | N/A | MLXNVYXLHDLLSSIVLNRDSQFISTMXKSLCKQLRITASLFTVYHSEIDDQSKRVNQDIERELRIYCNYMQNDXVKXISMMKFSDNSNIFLITSMILFYFNKEFHSRMSFDSDTTDYETTCKRLEARKADDIVIXMKELLNFDCQQLKKTKLIIEVQVNKHRXNVTYEVNDXIXLSFRNVKTMRLCKDLKDKQLDLYQITVKVSVFYHLRLSVSMKHLHSMFSLKLLQSYSEDSLSEQHSESLRLITIEDDEHXEIDDILNFRCYRDQIQYKVKXTDLNKDDEXYYVDKEKFNDSEKVLNKFHKLYSNKPR |
| Ga0272424_10023238 | F023763 | GAG | MSFQNCLMLILMLRIECILLFRKIFXATCQSIQLIINLVEMISDAIVESRQKLTSMSLTTTQLLSXHEILKIFVIHDHLNKVNRIFKLXSSFLESANNDHEFFIIDLVVTLNXIMLLXKVSNXMKNLILIILKKNVFEYIVXSIDFYHNLMI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |