NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1002484

Scaffold Ga0272424_1002484


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1002484 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32848
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008115Metagenome338Y
F008169Metagenome337Y
F028667Metagenome190Y
F039410Metagenome163Y
F050043Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100248410F008169N/AMFYEIXKTXSLAFDEETDQLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFNDAAEITQARCKRDCVNLYRIVDDFLKELAQLFDDLNKKVNFRRKYYNLVQEFKKFSEFYTQFQRLSFYLNYHKKQLITDLKDKIHSCFXFVXVNQLVQSDSLKEIRFYLIHLNNDQQVIQEIKNKIKCVNDLSKTIFHKATVVTQSVDHLKSDQLKSRDAILTNVKEADILVESCFICHKSDHSFKECLNESTRINAVNNEYDRFDFNSNFDSKN
Ga0272424_100248413F050043N/AMFMCYLHVIIAVIYINYTSHILFTHHHCCHLHQLHITYTIYTVIYTHYNRRXIIIQLKVSLFLVFSQRFEGFYRELLERINEYASSFIRLNKDINYXDXEXIYLEKKTIVMMNXHIETKVKDXVEDQIXISSETLXLCQDII
Ga0272424_100248415F028667N/AMTCDSESVESQTAHLLRSIASRQVSLISFDASARFQNVAISXDINTDQQLHQXAINQSDEIIKMLIELRDQRDMTLKLNEQXIDLQVDHIKRLNELKINQTTIDTQEETIIKLXKKVLNLKKKQRSVNQSRSQQSTKSQAFIENHTQRESFTLFNNNHHKFFKFLNSFIFTDEDESTXNSXRIKIDNKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXCXHNASHSYISIDELFEHLKEIYNELNKNRKCRRKYNALRQADKSFNIFYFNFMKLFSYLEYDNCTLMNNLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQQVNYQLHSKRCTVIIKVTVISDKRATTFLSAMMILIINYVKSIIFSTSESDQAKSSIICYICKISRHLFKNCSQNKINTFASCAFILRLHEIIISKNKENEKMSFENSEAKN
Ga0272424_100248416F000597N/AMTSMSDDSFASESLTTECILSSNEISYSLKLLINIEAADYLFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLIIHVIYSNLTVQDHMIDTASMLITXLD
Ga0272424_10024847F008115N/AMNFITELFLSEDYNIICTIICHLIKERRYVFCHXEDNDISVEEKVXIMLXNVYXLHDLFSSIVLNRDYQFISTIXKSLCKQLRITASLFTVYHSEIKNQSKQVNQDVERELRIYCNYMQDDXVKXISMMKFSDNSNIFSITSMTFFYFNKEFHFRMSFDSDTMNYETTHERLEARKADDIVIXMKELLNFNHQQLKKMKLIIEVQINKHRXNVTYEVNDXIXLSFKNIKTTRLCKDLKDKQLDLYQITVKVSVFYHLCLSVSMKHLHLMFSSKLLQSYSEDSLSEQHSESLRSITIKDDEHXEIDNILNFRCYQGRIQYKVKXTDLDRNDEXYYVNKEKFNDSEKVLNEFHKLYSNKSR
Ga0272424_10024849F039410N/AMNKAKTLILFFFEXFNNVLNEAAFMLXIENDFSRMSRLSIIEILVXMIEESEDDRDQLECFELREIEKIKIEVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXLISTINIDTVNFLXLSMMRLSKILXVIIFLDIFSSYSLISFSFISDIDXIFSFLHTLSTRLECMIV
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