NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1002653

Scaffold Ga0272424_1002653


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1002653 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31674
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (17.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F024448Metagenome205Y
F079402Metagenome115Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100265312F086376N/AMTRNSESESITRYELQNVRRKSLLSQNXTASEEENTNALLNTEEENTNALLFNHEMIKISISTELNAXISTHEADDIIVFIKYICQQHDIKIKIHNDMIQMLEDVNEINIMLKITQTRLQKENRNKNMIIHYLKAALSXQSTSTSED
Ga0272424_100265313F079402N/AMQNKLKMNKNHFSIEELKIAYVKSXVDEMMIKHIALXMRNAITNSFLEAEKMLLIINKMYDDFNQCYMTQQ
Ga0272424_100265325F013598N/AMNFIINLFNLYDYNVILTVICKLLKERHYISCIINDEDITVKKTAEMLL
Ga0272424_10026536F024448N/AMKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLALIKAKSIQEFDDHYVKKLITHVIYSNLTVQDHTIDTAFMLITXLDQHQIILEKTXMNKINLVIDMQIDFLQFSNFISSQKSIVLLTSNKTITKQKSLTSTHILKRSFTTS
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