NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1002866

Scaffold Ga0272424_1002866


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1002866 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30088
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (27.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F042102Metagenome158Y
F044227Metagenome154Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100286614F083460GAGMQLQMKSSDSQAYFDALLELNTSLNEYAMRRXLHELLNHRLNHEESQGNSKNDDENEAAEAV
Ga0272424_100286628F042102AGAAGMNASSDTEEKNMNALLFDHEMIKISINTELNAXINTHKADNIIVFIKYIYQQHDIEIKIHNDMIQMLKDVNKINITLKIMQTRLQKENRDKNVIIHHLEVALSQQSTLISEDQSSKSIKLLDLSLFKDSSQNVNNXLLRMQNKLKTNKNHFSIKELKIVYIESXVSEAAIKHIASXMRNTSLNLFLKVEEVLSIINKMYDDFNHCHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELKYNNETLLDDLQHKISSDLQQAMLNEXITNLNEFIDICMQVDVRLTELNARSVVKALATQAARFVSSTLTIRLTSSVSSXKKFRRLNLNSIQKELFKKELCFKCKKSEHRAYDCLKMI
Ga0272424_100286631F036035AGGMKDDAMQREHHELEKASKNHERDNSDHSNNTLDKHTEPISDCDVIKESNERERK
Ga0272424_100286634F044227N/AMQLXLKSSNDETCISALLELIAFAIKNATRRQLLELLNNHYYHEESQSSCKNDDENEASEAI
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