NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1002987

Scaffold Ga0272424_1002987


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1002987 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29202
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (21.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F032102Metagenome180Y
F069514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100298712F069514GAGMIEFIDNNALFSVIFLISFFLNKDFHSYMSFELDVIKYESFHERLQMTKVKNIFEHMNKTLKFAHESLVKT
Ga0272424_10029872F032102N/AMKIADLEKNISESIYKQILETNEIDENCTLLREAIARDKTQYEDIKLKNCRTQNEILYHDSQL
Ga0272424_10029873F013598N/AMNFIINLFDSSEYNAILTIICKLSKERHYISCITDDEDITVEKTAEMLIQ
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