NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1003030

Scaffold Ga0272424_1003030


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1003030 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28901
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (14.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F036994Metagenome168Y
F086376Metagenome110Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100303028F021452N/AMSDDSFDFKSFTVNIILSSLEKIFKFFALINTEVTDMTFIDESLMSKLCERFNIQLILLLKSKLIXSYNEIFDXKLITHALYTLIMIQEHKNEMMFLLITYLD
Ga0272424_100303031F086376N/AMTRSSESASIAHYDLQNAKRESLLLQNQTASEEEGMNASSDTEKKNINMLFFDHKMIKISISTELNAXISIHEADNIVVFIKYIRQQHNIEIEIHNDMIQMLENVNKINIMLKITQTRLQKKNRNKNVIIHHLKAASS
Ga0272424_100303034F036994AGCAGMXDRVIIEADSLVDLLIKEIDYRLALEADSLVAREREVDRFTDR
Ga0272424_10030305F096307N/AMLYIVVTQIDASLKEDVLKHKKDVDLNDVCDTKKCVCHRNLLTTRNTKKCVCLEGNRSXLEDAREGKRCXVISESDLSQI
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