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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1003050 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28741 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (10.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F005901 | Metagenome | 386 | Y |
| F036504 | Metagenome | 169 | Y |
| F086375 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100305015 | F001253 | N/A | MKDVLISSTMNSLNDLFALKSLTTECILSSNEINYSLKSLIDTEAADYLFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYLNLTVQDHMKRFIFMLITRLN |
| Ga0272424_100305016 | F036504 | N/A | MSRQDTQSAEQXVNQKEAHFQXEFSTLSDNENENDHHKFIKLLNSLIFIKTNDSIXETXNIKIADKLNVNVNHYFTEKIHIVYVISRLENDADQQIYAKYHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCCHEYITLKQLNKFFSSFYSEFTRIFSFLNYDNVILMNDIQNKINNHLQNALSVCLIKFSSLNKLKIFLQNVNNKQXVNYQLRDEQRTVKSIAASKKRFVSSLTSASVSITSYVQLATFFILKSEXSRMLIICFNCKASSHLSKNCSQLKTSTSTSYAFTSCLNEIIMLKEEKKLFTEKLKNETKN |
| Ga0272424_100305027 | F086375 | N/A | MFTLFINSKSITSXNRGKNWFNEIKEHYKQQNNDRVIIFKQLHKLRQFNVXKEANEINKAAMKDNVKDEIEQEQKNKDIHDNASQ |
| Ga0272424_10030504 | F005901 | N/A | LIYELFEHLKEIYDELNRNRKCRCKYNALRQADKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTLLIHLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKCAAISLSVTTLIIDYVKYIFSSISESARSSIICYICKILDHLFKNCSQNKINTSASYAFTFRLHEIIISKNKKNEKMSSFKNSETKN |
| Ga0272424_10030508 | F005901 | N/A | LNSFIFIDEDESTXNSXRIKINDKLQTNVNHFNNENICIIYVISRLEDDAAEHIFAXCXHDASHSYISIDELFEHLKEIYDELNRNQKCHHEYNALKQADKSFNVFYFNFMKLFNYLDYDDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQNVNNKQRVNYQLRSQLRTVIVKVTIVSDKCVATSLSVTTLIINYVKSIIFSISESDXVKSSIICYICKISRHLFKNCSQNKINTSASCAFTLHLHEIIISKNKKNEKMSSFEDNKTKN |
| Ga0272424_10030509 | F000597 | GAG | MTSMSDDSFASESLIIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFNDHYAKKLIIHVIYLNLTVQDHMIDTVFMLITXLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |