NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1003065

Scaffold Ga0272424_1003065


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1003065 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28660
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F051591Metagenome143Y
F052973Metagenome141Y
F064254Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100306518F064254N/AMQELYEFISLLFFLSFIXLFNDITAXNXFSMLIESIIXIIIIIALMISKSFLKFVMFSSHCIAFHSTFHLKHVNKMCLINIXSLLHVHIIVVTSSTHLSCRNXLKSIFLMRNCINNALXDFAXFLCSHRCXCIIFDVKYXKXAALNLSFQTILHVYLICFCMSISLVITSMCXCSVSNKDKSCASSIILFITSFLSTSACLVT
Ga0272424_10030652F051591N/AMLDAIALYFRYRSSCVISLRIVTTDLDLLPCASRKGKTDSDLIRNTLLLXNNVVLCATFKRKRVRFRFLRQYAVFCVVLKSLDDLFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFWPAXAQKILIFDFXLATQSSVKLLSRMRTCFDRMIVLYNLSIDLIYHMLR
Ga0272424_100306523F010214GAGMKVSVLFNYDASSLLCSSLMIFYTTMFXFNSQFKDERRFLCIHDAHDCNVHKAVFSYSMIVIHXAEKYVMKERCTXXKDRVXLYXVILFFSXFDLCHVNVEXIVSIDMQLQLFDVXLXSMKENAFXLFSXALNFSCE
Ga0272424_100306528F052973N/AMFRDCARLERDVFVTXKECDVDEQDVDERKECXERKRDXVIS
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