 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1003330 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27240 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (32.14%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F009580 | Metagenome | 315 | Y |
| F021026 | Metagenome | 220 | Y |
| F061399 | Metagenome | 131 | Y |
| F080690 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100333014 | F080690 | N/A | MKSFHNFLINNERVVEQFTQSVIENSVEIFRAMQELQNQVQQHDIIISSSFIVLSSSIYIELNSQSFATIVQIIAQILNNQSSFIIHFFANSVAIFITFRFKKLLDISEYEKNKDXLNAXKQSLIQRMNMNDDHYFSHRVKIIYVESRLIIDKKIHNLMSQYRVNDLCIIFIFADXXHKLRHCCDNFFKTEDAHLYFREILKQDMNSFVDYYNLFYQKKECSLMKNFSLIDCLKRNVNYF |
| Ga0272424_100333015 | F001951 | N/A | MTKLKFIDSLRNEKERNKDTVEITVTEMMIFELKKLLVNAKMLLTLMNETMTKTKQD |
| Ga0272424_100333016 | F009580 | AGCAG | MIEVRVKRLRLVDKMICIQISERDLAQKLNFSCKQQDFFIYIDDVIVVNIHDMQSEELLIXAFFSNFAXMLQLAVVVQLSLVADFLDLRNDQNLILNNDNDKA |
| Ga0272424_100333017 | F021026 | N/A | MIVFYILRQAQFKVLALALIDSEVFAYVFMNKFFTQQHHLFLHQLTHSCRLQEFDDQVALIDDIIHVVKITIILDEYIERLFFYVIELSQYFIIMSLSXLCYHVIDVNFEHNILILSFFFCLNHCCSFLVKIYDFNQQEENFLFKVNKVAFFQSCSQFTHKKQLSSXITHKKQFSLQIIHKKQFSLQIAHKKQFSIQFACKKQSSFSFTXKKQFNFSSAHKK |
| Ga0272424_100333022 | F061399 | N/A | MNITYKYVLVFVDHLIKMRHLVLITSIKVEEAINCFYAHVXKHHDLLEFFMSDQDTQFIFDVXKHMCKMLKINVKLSMMYHFEINDQIEKVNAVMKHYLQVFVNYMQNDXAKXLSEVEFVINNTSSSIILASLFLINSSQNSRLDFKSFESLLENLTSQAXDKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFNVNLSRRSCSRYFVEDEVXLNACNLSIVCLAVKLDDHNVDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVILLNHIASDLLLSQHQKSXELIIIKNDKRFXYVNSILNFKRDKHYNSSLLKYYVDXENHFFTXESFHLLNNCEQALNEYYLVNSVVEESHVLLCVMSQCQCQEL |
| Ga0272424_100333026 | F003820 | N/A | MKLFNYLDYDDCILMNDLQNKINNHLQNALSVCFEDFASLHHLKIFLQDVNNKQRVNYQLRSQLCTVTVKVTIVPDKCIATSLSVMTLIINYVKFTLSSISESTRLSIICYTCKTSSHLFKNCSQNKINTSASYAFILHLHEIIISKNKKNEKMSSFKDSEAKNQRLSSKTRXKRC |
| Ga0272424_100333027 | F000597 | N/A | MKEMLISSTISMSNDSFASESLTIEYVLSSNEISYSLKSLINIKVADYSFIDEVITQIVCDQLQIESLTLIKVKSIREFNDHYAKKLITHVIYSNLTV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |