NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272424_1003344

Scaffold Ga0272424_1003344


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1003344 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27149
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032884Metagenome178Y
F033266Metagenome177Y
F037509Metagenome167Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100334419F033266N/AMFSHSSTEERSEEFQNRFFQIFDADSSKSRTKLSSAASFIHEDDESFAETIIFLVFYEIXKAQSLALDEETDQLYKLNKQQEDEIKELKTRLQAKEKTFSDFIYSERSRS
Ga0272424_10033442F032884N/AMTIRNERVEREECERTKKNESMMMRVEKERLYAQTIDVIDQXKDIKQRLXSDYM
Ga0272424_100334420F061401N/ALNNDQRVIQKIKNKIEHVNDFFKTIFHKVTVVTQSVDHLKSDQLKLHDAILTSVKEVNILVKSCFICHKSGHSFKKCLDQSTRINAVNNKYDHFDFDLNFDSKN
Ga0272424_10033449F037509N/AMILIFILIQINSTDNEMSIKKFVYLIIDDIERQNNIKKSIESTRIYDHVIAKESITQSVASVQID
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.