NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1003526

Scaffold Ga0272424_1003526


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1003526 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26322
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009377Metagenome318Y
F023763Metagenome208Y
F094624Metagenome105Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100352615F001951N/AMTKLRFIDSLRNEKERDEDTVETTVTKMMIFELKELLVDAKMLLTLMNEMMMKMK
Ga0272424_100352618F009377N/AMIRSTELESESMSIARYELQDAERESLLSQNXTASEEEDTNASLNTEEKNINALFFDHEMIKISISTELNAXISTHEADDLVAFIKYICQQHDIEIEIHNDMIQMLIDVNKINIELKAINIKLKATQTTLNVVQTRLQKEMKKKNVIIHHLEATSSRLSTSISEDRFLKSIKLSDSSLFKDSRQNVNNXLSXMRNKLKMNKNHFSIEEMKIAYVKSXVSETTIKHIALRMRITITNSFLEAKEILSIINKMYNDFNQHHMTQRQFLKLY
Ga0272424_100352619F104136N/AMIFSIRLAQIFSESXSMNKLXIXTNSSTFACKSTFNXRNXMLDQSSRHQRLKSLTLLLASXXXSLLQSQLQSLHERNSEYXTLILLERSCLRKNSASNARSQNIEHTIVSSQLRCMKLQRIRKTICLHQSSDXKXYTHILFHQHV
Ga0272424_10035266F094624N/AMSDXDTQFIFNVXKHMCKMLKIDVKLLTTYHSEINDQIKKVNAVIKHYLXVFVNYMQNDXAKXLSEVKFVVNNASSLITLASLFLINLSQNLRLNFKSFESLLENLMFQAXDKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFNVNLSRRSCSKYFVEDEVXLNACNLSIAHLVIKLNDHNVDLFKIKHVFKNNSLIIELNLSTFMKIHSIFHVILLNYITSDFLLN
Ga0272424_10035269F023763N/AMSFQNCLMLILMSRIECISLFKKIFXATCQSIQLIIDLVEMISNAIVESRQKFTLMSLIMIQLLSXHEILKIFVIRDHFNRINKVFKLXSLFLESMNNDHEFFIVDLIVTLNXIMLLRKVNDXMKNLILIVLKENVFKHIVXSINFYHNLVIXIIMTKNNLESEDFLKSVECNLTFLKSDKEYIFFDETSERDSYSTIVIDESSIKVREI
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