NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1003551

Scaffold Ga0272424_1003551


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1003551 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26205
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F044226Metagenome154Y
F057012Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100355111F036035N/AMKDRTKDDAMXREHHELEKASRNHERDNSDHLNDTLDKHTESISDCDIIKESDEREKK
Ga0272424_10035513F057012N/AVTENDMLISCFINMLDDSFDFKSFIVDVILSNLKKIFRFLALIDIKVTDMTFINNSLISELCECFDIQSISLFKSKLIHSYNKIFNRRFITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNLXLKRNQILVDSANNXLISSSNIQILKLIVLKTSSQSAFHXLESSEICKMKRKNLKSMSMIILKRTINSKSVNRFIESVFIXKQSTQVDLD
Ga0272424_10035519F044226N/AMQNDXVKXLLIMKFSENFNIFLIISMTLFYFNKNFHSXMNFDSDMIDYKTIHERLKARKADDIAIQMKELFIFNHQ
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