NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1004015

Scaffold Ga0272424_1004015


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1004015 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24317
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F028978Metagenome189Y
F036504Metagenome169Y
F039410Metagenome163Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100401510F039410N/AMTFLXLALDRLLTHXVLYAIFLLMFIMNKAKTSILFFFEQFNSVLNKATFMLXIENDSFXAVIEMSHLSIINVLVXVIEESEVDRDQLECFELREIEKIEIEVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXLISAINIDTVNFLXLSMMRLNKILXVMIFLNIFSS
Ga0272424_100401511F066295N/ALKTKFQAKENTSSDFIYSERSKFQKISDSSLFTDEKNSTXENXYEKIQNKLKINVDLFSNERVKLSYIHSRLFDDTAKIIQARREHDYVNLYKIIKDLLKELTQLFNDSNKKVNFHREYYNLIQEFKKFNEFYTQFQRLSFYLNYHKK
Ga0272424_100401514F036504N/AVNHYSTEKICIVYVIFRLENDADQQIYAKHHVDTFSFYQLLSKLLKHLKEIYKDQNLIQKCRCKYVVLKQLNKLFSSFYSKFTRIFNFLNYDDVILMNDIQNKINNHLQNALSICLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKCFVSSLTSASILITSYVQLATFFILESEXSRMLIICFNCKVSSHLSKNCSQLKTSTSTSCAFISCLNEIIMLKEKKKLFTEKLKNEAKN
Ga0272424_100401517F028978N/AMKIADLKEKENNESIYXLILEVNRINENCILLHEVVLKDEAQYKDIKLRNCXVQNEILYQDDLLXVFFDEHL
Ga0272424_10040154F004755GAGLSYIHSRLFNDAAEITQARREQDCVNFYKIVDNLLKKLAQLFDDLNKKVNICRKYYNLIQEFKKFSEFYTQFQRLFFYLDYHKKQLIADLKDKIHLRLRFIXVDQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKIKRVNYLSKTIFHKATVITQSVDHSKFDQLKSRDAILTSVKEAEILFESCFICHKSDHSSKECLDRPTRINAVNNEYDCFNFNSNFDSKN
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