NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1004034

Scaffold Ga0272424_1004034


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1004034 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24182
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F033266Metagenome177Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100403410F070712GAGMNDIKEKKFLIKVRKQVIFAEKXDSLNFYRKIEVTTLVDHSKSHKAILTNVKDINLQAEICFICHKSNHTSKECFNXLRVNALKDDEFD
Ga0272424_100403414F033266N/ALLSIVIRSILFQTNLIIFNHSFTEECSEEFXNHFSQIFDADSSKSXMKSSSAASFIHEDDESFAKTIIFLVFYEIXKTXSLALNEETDQLYKLDKQQEDEIKELKTKL
Ga0272424_100403420F002432N/AMILFYFNKEFHFXMSFDSDTTDYKTTHKRLEARKANDIVIQMKELLSFNHQQLKKMKLIIKVQINKHKXDVIYEVNDXVXLSFRNVKTTKLCKDLKDKQLNLYQITAKVNIFYHFHLSVSMKHLHSMFSSKLLQLYSEDFLSKQHSESLRLITIKDNEHXKIDDILNFRCYQGRIQYKVKXKDLDKDNKXYYVNKEKLNXSLQVKFSTRQDSIQVKILDSSI
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