NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1004181

Scaffold Ga0272424_1004181


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1004181 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23646
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F032884Metagenome178Y
F055318Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10041812F032884GAGMTIRNERVEREECERTKKNESTMMRVEKERLYAQTIDVIDQREDIKQRLSSDYM
Ga0272424_10041814F055318N/AMLCDDEMLCVDHMQSFRDRADFNNLNAHVTSNLHADEKVK
Ga0272424_10041818F000597GAGGVTFIKDAMKDVLISSTMSSSDDFFASKSLTTECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLTLIKAKSIREFNDHYAKKLITHAIYLNLTIQDHMIDTASMLITRLNQH
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