NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1004187

Scaffold Ga0272424_1004187


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1004187 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23617
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F074202Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100418717F009377AGAAGMNASSDIKEENTNVLLFDHEMIKISISTELNAXISAHEADDIIVFIKYICQQHNIKIKIHNDMIQMLEDVNEINIMLKAAQTRLQKEMRDKNVIIHHLETASSQQSTLISEDYFLKSIKLLNSSLFEDSSQNVDNXLSXMQNKLKVNKNHFFIEELKIVYIKSXVSEAVIKHIASRMQDIFLNSFLEVEEVLLIIDKMYDDFNHHHTTQXQYLKLYQNKIFFHEF
Ga0272424_100418720F074202N/AMISSXKLVISKLRLHVETELNFKEEVILRCSFFTAKDDDLDSSFNLKTATNFIKFLXFIIFHNDXSFFFNLFLSVKCNVTRSKXADAENXAFKSEVVVDLAVVNLAVVNLAVVDLAVLDNVDNENSLKFENLDCEDGMKRLTSSVSLFFSSDIVN
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