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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1004332 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23104 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (18.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F021026 | Metagenome | 220 | Y |
| F038484 | Metagenome | 165 | Y |
| F064252 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100433211 | F008735 | N/A | MIIIHVHALYQILLSCIQLIFVLLIFKYVKKLLESKSNEDNDRVHRKMNDKKRLIVQDLCDDLSYHHERLRIKLYIDXRTENDEXEQDDNIMLSNLILKLLHYMKDFNXIFNHILNELFDNMLIVDQRIVK |
| Ga0272424_100433218 | F064252 | GAG | MTIDTQEETIIKLQEKVLSLKKKQRSANQFQSHQSTESQVSTKSLPRQSIENHTRRESFTLFNNDHHKSFKFLNSSVFIDEDESIXDSXRIKMNDKLQTNVDHFDNENICIVYVISRLKDDAAEHIFAXRRHDASHSYISIYELFEHLKEIYNELNRNXKCRCKYNALRQTDKLFNVFYFNFMKLFNYLDYDDCILMNDLQNKINNRLQNALSVCFEDFASLHHLKIFLQDVNNKQQVNYQLRSQLCTVTVKVTVVSDKHVATSLSVTTLIINYVKSILSSTSESARSSIICYTCKILSHLFKNCSQNKINTSASCAFTLCLHEIIISKNKKNEKMSSFKDSEAKN |
| Ga0272424_100433225 | F038484 | GAG | MFRSMRSILICIARVLSAFXKSSRIFIILLLKCNLCAEIMLTSATRSLYFSHCXFHXFLXYYFIVILLLVEIIVKKKMYRLHLNCIFASSXMKTFRSIIFLMMSEXERTQLTFVKXVCISLHACLISCIXLLTXLCSVILFCSMFKXTCSELVYVSVFKVSMFTLLNTSATXHRVXFXSVSSLHSLLNSSFFLSRXCQTDASNAISDLTTAEYTCLAFVKITSHVKTSRQLSVSIFVTXFVFICRRCASHCSFVFSCIFKTCTSDFNLITKLFIYMLVIMSNLFDFLVKCVSSYFSDANIALXMRAHFAQTSCALLNVLQISSVNLL |
| Ga0272424_100433229 | F009580 | AGTAG | MICIQISERDLTQRLNFSCKQQDFFIYIDDIIVVDIHDTQSKELLIXAFFNNFTQMLQFAIVTQLSLVADFLNFKNNESLILNDNNNEV |
| Ga0272424_100433231 | F021026 | N/A | MNKFFAQQHHFFLHQLTHSYKLQEFDDQITLIDNITYIIEITMILDEHIKRLFFYIIELSQYFIIMSLLXLCCHVIDVNFEHNILILSFFFCLNHYCQFLIKIYDFNQQKENFSLEVNKVAFFQSCSQFTHKKLSRF |
| Ga0272424_10043328 | F009580 | AGTAG | MIKVKVKRLKLVNKIICIQISEHNLVQKLNFFHKQRDFFIYTDDVIVIDIHDTQSEELLIXAFFSDFAQMLQFAIVVQLSLIADFLDLKNDQSLILNDDNDKV |
| Ga0272424_10043329 | F001951 | N/A | MTKFKFIDSLKNKRERDKDIVKTTVTKMIIFELKELLINAEMFLTLMNKMMTKMKQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |