NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1004752

Scaffold Ga0272424_1004752


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1004752 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21750
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F010214Metagenome306Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100475220F010214GAGMRVSVLFDYDASSLLCFSLMIFYTTMFXFNSXFKDERRFFCICDAHDCNICRAVFSYSMIVIHXAEKYVIKERCTXXEDKVXLYXVTLFFSXFNLCYVDVEXIVSIDVQSQSFDVXLXSMKKNAFXSFSXVLDFSRE
Ga0272424_100475222F002432N/AMKFSDNFNIFLIISMIFFYFNKEFHLRMSFNSDTTDYETTHERLEARKANDIVIQMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLRLSISMKHLHLMFSSKLLRLYSEDFLSKQHAESLKLIIINDDDDEHXEIDDILNFKCYQGRIQYKVKXKDLDRDNEXYYVDKDEFNDFEKVLNEFHALYLRKSR
Ga0272424_100475226F066295N/ALNELSKQRDNEIKELKTRLQTKEITSSDFIYSEHSRSQKIPDSFXFTDEKNSTXENWYDKIQNKLEINIDLFSNERVKLSYVHFRLFNDATDVTQSRRERDYVNLYKIVDDLLKELTELFNDSDKKVNFHRKYYNLIQELKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFIXID
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