NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1005093

Scaffold Ga0272424_1005093


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1005093 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20765
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051591Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10050931F051591N/AMLDAIALYLRYRSSHVISLRIVTTDLNLLSCASRKGKTDSDLIRNALLLXNNVVLCAIFERKRVQFRFLRQYAVFCVVLKSLDDLFFSCEFALRFINQITVXINDSFFCVDELSFRRRFWPAXARKILIFDFXLATQSSVKLLSRMRACFDRTIVLYNLSIDLIYHMLR
Ga0272424_100509321F051591N/AMLDAIALYFRYRSSRVTSLRIVTTDLDLLSCASRKGKTDSDLIRNTLLLXNNVVLCATFERKRVRFRFLHQYAVFCVVLKSLDDLFFSCEFAFRFINQITVXIDDSFFCVDELSFRRXFWSAXARKILIFDFXLATQSSVKLLSRMRACFDCTIVLYNLLIDLIYHMLR
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