NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272424_1005550

Scaffold Ga0272424_1005550


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1005550 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19423
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F019260Metagenome230Y
F038010Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100555012F038010N/AMNNDHLMLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHSLLCFSLSEICILQKFDDQSVVFNSITHYALVKLXVSSKELEETLFYVT
Ga0272424_100555013F019260N/AMSQFKNISNTLSLTSLASINELITVAQFRTHVNNALEAXYTFLIELQTXFNDIITQYINXVSVCQQEHEQTQIELKQSQINNEILSKMIQELKSISRIDIKSKKYLNSELYIKEQENKLNQFIFELISKLKLNVNYYSTFESRLLYEYSRLSRNAVAQALLHMTAQHDKLITIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNCIFIEYLFDFQQHIDAIEYDVITXKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSQYCVTVQNLLKSKAVIHSVFVISTVFVYFVKYATLLTDLKATILSLKNFMNLSIINMKKQDSLTLEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVISLFAFAIFIDNFTFNTSLVLRKV
Ga0272424_100555016F009377N/AMIRSTASESVSIAYYELQNARRESLLSQNXAASEEEENMNALLFVYEMIKISINEELNAXITVNETDDIIIFIKYMLHQHDIEIKIHNDMIQMLKDVNKTNITSKATQTRLQKEMRNKNVIIHHLETASSQQSTLISEDCFLKLIKLLNSSLFEDSTQNVNNXLSXMQNKLKINKNHFSIKELKIAYIESXVSEAAIKHIAFXMRNMFLNLFLEIEEVLSIINKMYDDLNHHHMIQRQYLKLYQNKIFFHEIXMKFQRFNAELKYNNETLLNDL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.