 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1006294 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17772 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (8.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010214 | Metagenome | 306 | Y |
| F036035 | Metagenome | 170 | Y |
| F041516 | Metagenome | 159 | Y |
| F094622 | Metagenome | 105 | Y |
| F104135 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100629410 | F104135 | N/A | MFVVYLSTLKHQLSLYSDEYKXTHLFIKLKSELRMIITNVQSISMTXNALINLVAQLKINLQKEYFLLLKQSQDRDLYDQTKINKKTYFRQKKSYKLIKLNTLSKLSFNTLMCYNKDLLKIMCXICNRKNHYAINCKDEKIKNKSKEFDVNQVFIDSMLHMNHLKISRKNKLLMNTSNHXGKNKKFSL |
| Ga0272424_100629416 | F094622 | N/A | LKQKVYLNDSDSRNDVTVIAMRMNXELNKRLRRLTLIIIHHNELKELVAKAKHLADVTTANQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQ |
| Ga0272424_100629417 | F094622 | N/A | MFALKQKVYSNDSDSRDNVTAIAMRMNXKLNKRLRELTLIITHHNELKELVARAKHLADVVTANQECHEKIYKVYSDSQTFLKTVKVMISTKDQTCLQQV |
| Ga0272424_100629419 | F036035 | N/A | MKDDAMQREHHELEKASRNHECDDNDHLNDILDKHTELILDCDIIEKSNERKRK |
| Ga0272424_100629422 | F010214 | GAG | MRVSVLFDYDASSLLCSSLTIFYTMMFQFNSRFEDERRFLCTCDAHDCNVRRAVFSYSMIVIHXAEKYVMKKRCTXXEDRVXLYXVTLFFFXFDLCHVDVEXIVSINVQSQSFDVXLXLMKENAFXSFSXALDFSCE |
| Ga0272424_100629424 | F041516 | N/A | MRKSSNNIHEAYNSSLRDHEIIHEKENLSNIEKTLHMKKENILVKDFNLHHFT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |