NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1006340

Scaffold Ga0272424_1006340


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1006340 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17672
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F068292Metagenome124Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100634010F104134N/AMSSLLSLQSDMIRFLXSVNTSAIFCRICSIDFFCISFISLLFIILIMTFHFLQSDDESLLERCFLVAIFSLVTFAHDVIFVERRMFLCVYNCLLSSXTDVFSFCTFFMMNAFXFAXCFSSELSXRCXISFNAISFHEXSLFFSFSNVDIFISRSIILAMFSSLSRKYFNSASLFSCNESTSLAIIFKSALLQFMQFIVVQSSFRFTLSCL
Ga0272424_100634018F001253N/AMKDVLISSTMSSLNDLFASKSLTIEYVLFSNEISYSLKSLIDIEAADYLFINELIVQNVCDHLQIEFLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKCFIFMLII
Ga0272424_100634020F068292N/ALTLQLNEHXLFIQDDHKKKVKQLKVAFDKNDELEKKINQLQDKXLNFRVKQHQADQFMLCQNTQSAEQXINQKETSMISVSIHHSEVEXSSTFKAHFQXESFTLFDNENENDHHKFIKLSNSLIFIETNDFIXKTXNIKIVDKLDVDMNHYFTAKIYIVYVIFRLKDNADQQIYAKHCVDAFSFYQLLSELLKHLKEIYKDQNLIXKCCCKYIALKQLNKSFSSFYSEFTKIFSFLNYDDIILMNNIQNKINNCL
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