NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1006363

Scaffold Ga0272424_1006363


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1006363 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17620
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F057012Metagenome136Y
F086376Metagenome110Y
F098340Metagenome103Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100636310F098340N/AMIKVVAYQTLVKNKKIKIFFLIISKINKVLSSVEDFMKLNKVIFVMSLSELKKKLSIVYHNFLDIFDREKTTQLSLH
Ga0272424_100636318F104132AGAAGMNEILNFQVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVMNVYHAXNLDRSSKNSXITYVQESNDSEYESKN
Ga0272424_100636320F025887N/AMTENDILIFCFISMSDDSFNFKSFIIDVILSNLKKIFRFLALINIEVIDMTFIDESLMSELCERFDIQSISLLKSKSI
Ga0272424_100636323F086376N/AMIRSSKSASIARYDLQNARKESLLSQNXTASEEEDTNASSDTEEKNMNALLFDHKMIKISISTELNAXISIHEADDIIVFIKYICQQHDIKIKTHNDMIQMLENVNEINITLKIIQTRLQKENRNKNVIIHHLKVASSXQSTLISED
Ga0272424_10063633F057012N/AMSDDSFDFKSFIVDVILSSLEKIFRFLALINTEVTDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISDXKLITHALYTLIMIQEHKNEMMFLLITHLDQHKIIIKNFXLKRNQILINFANDXLISSLKIQTSKSVVSKVSSQSAFYRSESSKICKMKRKNLNLIVTSTIILKQLTNQKLVNQFIESVQFIESLFLVKSSTQVDLDQSQLIQSSKKEEFINIVIIEVAVY
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