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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1007491 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15686 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (38.46%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F011463 | Metagenome | 290 | Y |
| F028367 | Metagenome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_100749111 | F011463 | N/A | LKKTKLIIEVQINKHKRNVTYEVDDXVXLSFRNVKTTRLCKNLKDKQLDFYQITAKVSIFYHLYLSVSMKHLHLMFSLKLLQSYSEDSLSKQHSESLRLITIKDNEHXKINNILNFRCYRDQIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR |
| Ga0272424_10074914 | F004755 | N/A | LFNDSNKKVNFHKEYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIINLKDKINSHLXFIXIDQLVQFDSFKEIHFYLIHLNNDQRVIQEIKNKVNLIKHVNDLSKIIFHKAVVTQSVNHSKPDHLKLHDVILTNVKEADVLVEICFIYHKSDHSFKECFDQSIRINAVNNEYNCFKFNFNLNFNLKN |
| Ga0272424_10074915 | F028367 | N/A | LCKLDEILSEENYFEKFFLIDAHLILQNQFFNLHLLIDSDSVTHTLIHANLVNKVCKKLEIQSIFLTKEKLIRNYDEKIFKKIITHKILLNFIIESHKKLTISMLIADIDHHEVILSKLXMNKNEILLNMQNNIIVFSNQLNTSISIFLISLNSKHLS |
| Ga0272424_10074918 | F002432 | GAG | MMKFSDNFNIFLIISMISFYFNKDFHSXMSFDSDTTDYKIIHEXLKARKANDIVIQMKELLSFDHQQLKKTKLIIEAQINKHRQDVIYEINDXIXLFFKNVKITRSCKDLKDKQLELYQITVKVRIFYHLHLSISMKHLHLMFSLKLLQSYSEDSLSEQHAESFKLIIIDDDDNEHXKINDIMNFKRYQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |