NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1007702

Scaffold Ga0272424_1007702


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1007702 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15375
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037509Metagenome167Y
F057011Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10077024F057011N/ALRIIEEIKIISLCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYMLIHDKLVNKICQKLEIQSISLAKEKLIRDYDEKLARKIITHKILLNLTIKSHKKLTVSMLIADIEHHEAILSKLXMNKNKILLNMKHDTIVFSDQLNTSISIFLILSNTKHSSXLQSTSISSAAHSKIFKMLKHSVSFNQKESFSIQNIDIVSF
Ga0272424_10077027F037509N/AMISISILIQIHSTDNKMSIKKFVYLMINDIERQNNIKKSIESTRTYDHVIARESIA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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