NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1007887

Scaffold Ga0272424_1007887


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1007887 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15123
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F076668Metagenome117Y
F086375Metagenome110Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100788714F086376N/AMTRSSESASIARYELQNARRESLLPQNXTVSEEEDTNASLNTEEENTNALLFDHEMIKISINTELNAXISIHEADDIVVFIKYICQQHDIEIKTHNDMIQMLEDVNEINIMLKITQTRLQKENKDKNVIIHHLKAASSRQSTLISEDRFSKSIKLLNSSLFKDSTQNVDN
Ga0272424_10078873F000597N/AMSMSDDSFAFESLTTEYVLSNNEISYSLKSLIDIEAADYLFIDEVIAQIVXNQLQIKSLTLIKAKSIREFDDHYAKRLITHVIYSNLTV
Ga0272424_10078878F086375N/AMFILFVNSKSITSQNRDENXFNEIKKHYKXQNNNCVIIFKQLHKLRQFNVXKEVNEIDKAVMKDNVRNEIEQKQKNKNIHDNASQ
Ga0272424_10078879F076668GAGMHLTDHYAIKETSVFKSITTTKKIMHMSNALFTDILMLCNRKDATNQTLLRCAKFENIRRLQKILFSKXFSKDXLKRLCMIMLKRTCYNMIFAFSALSXVLFKKSLKTLXFSLXKVSALLFHIITLVVEFSLTFCSMQTSTXXQFMSNTSLFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVK
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