NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1008690

Scaffold Ga0272424_1008690


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1008690 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14114
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F032884Metagenome178Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100869012F070712GAGMNDIKKKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTLVNHSKSHDVILTSVKDINLQAEICFICHKSDHTSRECSDQLRVNALEDDEFDQSALNSESDSDSKN
Ga0272424_10086902F032884GAGMTIRNERVEREECERTKKNESTMMRVEKERLYAQTIDVIDQREDIKQRLWSGYM
Ga0272424_10086909F008115N/AMNFITELSLSEGYNIICTIICCLIKKRHYVFCHXEDEDISVEETVXIMLXNVYQLHDLPSSIVLNRDSQFISTMXQSLCKRLRITASLSTVYHSEINDQLKXANQDVECELRIYCNYMQNDXAKXLLMMKFSENFNIFSIISMISFYFNKDFHSRMSFDSDTTDYEITRERLEARKVDDIIIQMKKLLIFDRQQLKKTKQVTEDQINKHKRDVIYEIDDXIXLSFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLRLSVSMKQLHSMFSLKLLRSYFNNFLSEQHSESLRLLTIENDEHXKIDVILNFRRYXGXIQYKIKXTELDQDNEXYYVDKEEFENSKEVLVKFHKLYSDKSH
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Institute for Fundamental Biomedical Research
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