NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1008784

Scaffold Ga0272424_1008784


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1008784 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14007
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F038008Metagenome166Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_100878413F038008N/AMKXNHFYMMILXSKSSRIVIVANKKMSINQHCLDIFTLKQRVYLNDSNSRKNVMMIVMRINXELNKRLKKLTLVITHHEELKELIARMKHLADVVTKNQECHEKIYKVYSDSQTSLKTVKTMISTKNQTRSQXV
Ga0272424_100878414F021216N/AMKSRMKSNAMRKEHHELEKALRNCERNNDDHSNDTLNKHIESISSCDIIKESDERERK
Ga0272424_10087848F083460GAGMQLQIKSSDSQAYSDALFELNASSIEYATKHXLHKLSNHHFNHEESQDNSKNDDENEVVEAV
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