NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1008859

Scaffold Ga0272424_1008859


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1008859 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13918
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F019260Metagenome230Y
F038010Metagenome166N
F046102Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10088592F038010N/AMNNDHLMLSDNLESNEINVNLSVLIDINIINYAFIDDSFAQRHFLLCFSLFEICILQKFDDQSVVFNSITHYTLVKLQVSSEKLEETLFYVTQLLQFSVVLDLS
Ga0272424_10088593F019260N/ALINKLITVAQFQTHVNNAFEVXYTFLIELQTXFNNIITQYINXVSVCQQEHEQTQVELKQSQINNKTLSEMIQELKSISRINIKSEKYLNSELYIEEXENKLNQFIFKLISKLKLNMNHYSTLESHLLYEYSRLLRNAVAQALLHMTAQHDKLVTIKQLVILLRQVFDDSDKQEIAQRFISVLRMXNHIFIEYLFDFQQHIDAIKYDVITXKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYCVTVQNLLKSKAVIHFVSMISTVLAYLVKYATFSTDLKVTTLSLRNLMNLSIINMKKQDSLTFKKHQHCMINHLCLYCNKSEHQTATCNSKLKIQLQVISLFILAIFIDNLAFDTSLALRKA
Ga0272424_10088595F046102GAGGMTFIKDVMKDVLISSTMSSSDNFFASKSLTTECVLSINEISYSLKSLIDTEAADYLFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITQLDQHQMILEKTXMNKIEMTIDMRDDHLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSLIS
Ga0272424_10088599F010214N/AMKVSVLFDYDALSLLCSSLMIFYTMMFQFNSRFKDERCFLCICDAHDCNVRKAVFFYSMIVIHXAEKYVMKERCTXXENKVXLYXVTFFFSXFDLCHVNIEXIVSIDVQLQLFDVXLXSMKKNAFXSFSXALDFSRE
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