NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1015523

Scaffold Ga0272424_1015523


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1015523 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9104
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039410Metagenome163Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10155235F066295N/AMIFNRETDXLNELSKQRDDEIKELKTRLQTKEITSSDFIYFERSKSQKIPDFSXFTDEKNFTWKNXYDKIQNKLKINVDLFSNEQVKLSYVHFRLFNDAADVTQSRCKHDCVNLYKIIDDLLKELAELFNDSDKKVNFCRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXID
Ga0272424_10155237F039410N/AMFKAFKSHXVLYAIFLLMSVMNKAKTSVXFFFEQFNSVLNKAAFMLXIKNDSFXAVIETSRLSIIEILVXMIEEDEVDRDQLECFELRRIEKIEIEVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXLISVINIDTINFLXLSMMRLSRILXVMIFLNIFSS
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