 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032162 Open in IMG/M |
| Scaffold ID | Ga0272424_1028236 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5583 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008169 | Metagenome | 337 | Y |
| F008668 | Metagenome | 329 | Y |
| F017767 | Metagenome | 238 | Y |
| F028667 | Metagenome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272424_10282361 | F008668 | N/A | MISFYFNKEFHSRMSFDSDTTDYETTHERLEARKADDIVIQMKELLSFDRQQLKKMKLIIEVQVNKHKRNVIYEVDDXV |
| Ga0272424_10282363 | F008169 | N/A | MILDRETDXLNELSKQRDDEIKELKTKLQTKEITSSDFIYSERSRSQKIPDSFXFTNEKNSTXKNXYDKIQNKLEINVDLFSNEXVKLNYVHFRLFNDAADVTQSRCEHDCVNLYKIIDDLLKELAELFNDSDKKVNFHKEYYNLIQESKKFNEFYTQFQRLSFYLKYHEKQLIIDLKDKINPRLXFIXIDQLVQSDSFKEIHFYLIHLNNNQRVIREIKNKVNLIKRVNNLSKIIFYRAVVTQSVNHSKSDHLKSCDAILTNVKEADVLVETCFICHKSDHSSKECFDL |
| Ga0272424_10282365 | F028667 | N/A | MTRDSESVESXTACLLKSIANKRVFLISFDASAKSQNVATSXNINMSQQLRQXAIDQSDEIIKMLIELRDQXDMTLKLNKQXINVQVNHIKRLDELEINQMTIDTQEETIVKLQEKVLSLKKKQRSANQSXSRQSTEPRVSTKSLSRQSIKNHTXRESFTLFNNNHHKSFKFLNSSVFIDEDESTXDSXRVKMNNKLQTNVNHFDNENICIVYVISRLEDDAAEHIFAQHHHDASHSYISIYELFEHLKEIYDELNRNQKCHHEYNALRQTDKFFNVFYFDFMKLFSYLDYDNRTLMNDLQNKINNRLQNALSVCFEDFASLHRLKTFLQDVNNKQRVNYQLHSQLCTVTVKVTVVPDKCAATSLSVMTSIINYVKSTLSSISESARSSIICYTCKISSHLFKNYSQNKIDTSVSHAFISRLHEIVISKNKKNEKMSFFKDSEAKN |
| Ga0272424_10282366 | F017767 | N/A | MKEMLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFID |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |