NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1044110

Scaffold Ga0272424_1044110


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1044110 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3731
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10441102F000597N/AMKEMLISSMMSMSDDSFASESLTTECVLSNNEISYSLKSLIDIEAADYSFIDEVITQIVYDLLQIKSLTLIKAKSIREFDDHYAKKLITYVIYLNLTV
Ga0272424_10441103F003820N/AMKLFSYLDYDDCTLMNNLQNKINNRLQNALSICFKDFTSLHRLKIFLQDVNNKKRVNYQLHSQLCTVTVKVTVVPDKRVATSLSMTTSIINYVKSTLFSIFESARSFIICYTCKISSHLFKNCSQNKINTSASYAFTSHLHEIVISKNKKNEKMSSFKDSEAKN
Ga0272424_10441106F036994AGCAGGMXDRVIIEADSLVDLLIEEVDYRLALEAGSLVAREREVDRFTDR
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