NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272424_1085909

Scaffold Ga0272424_1085909


Overview

Basic Information
Taxon OID3300032162 Open in IMG/M
Scaffold IDGa0272424_1085909 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1906
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057012Metagenome136Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272424_10859092F057012N/AMSDDSFDFKSFTVDIILSNLEKIFRSFTLINTEVIDMTFIDESLMSELCERFDIQSISLSKSKLIXSYDEISDRKSITHALYTLIMIQEHKNEMMLLLITRLDQHKIIIENFXLKRNQMLIDSANDXLISSLKIXTSKSVISKASSQSAFHKFESNKICKMKQKNLNLIVTSTIILKRFMNQKSVNRFIESALIAKQSTQVDFDQLRSF
Ga0272424_10859093F104136N/AMIFSIRLAQIFSESXSTNELXIXMNSSTSACKSTFDXQNXMLDQSSRHQRLKSLVLSLASRXXSLLRSQLQSLHERNSEYXTLILLERSCLKKNSASNAKSQNIEHATVLNQLRCTKLQXIXKTTCSRQSSDXERYTHILLHQHVXXLIXFQVVHCXHHLE
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