NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315281_10194374

Scaffold Ga0315281_10194374


Overview

Basic Information
Taxon OID3300032163 Open in IMG/M
Scaffold IDGa0315281_10194374 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2265
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0315281_101943742F047595AGGAGMDFDIGSNQYRNAADGIEIDGMAQFSFEHNRRYNEMMLRGLIFDQQGSLVAKIAENSFAVNLQGEFEMQSEYPVVKLLRRETEEVLLEVKFLDGNHIQIHKARLYTGKGKPFEVTPALWKLKDETHSGESMDCEGKPVSLK
Ga0315281_101943743F022846GAGGMPLATPEELGEELSELAFDIIEQNWLKAHIGKAVDVKNLDPMQANAAEWELTYLILFAITSGCGTFSATDRDRTTAALKAFHATFLKQIAEQVGTDIVDAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLGEAAAIQILGKPIEDPQTVDMFRETIKVIFTEVREAVIKVMRHQQVAPAQGEA
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