NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315281_11769261

Scaffold Ga0315281_11769261


Overview

Basic Information
Taxon OID3300032163 Open in IMG/M
Scaffold IDGa0315281_11769261 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065016Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0315281_117692611F065016N/AHYPNQVKASASTPTIYPYTIEINSAVAAKVVRSTVTNAYNFLDIEIGRAMAQDLYIGAFNIGINIDHTEDFVTLHNIHHGVFWDEVESASYPTTIDTWVLKHGTALIVGRMDALEVNNFYVFSRFAGVILTDSPDTTIPNGLNGWGSFSDIDLQSMQYGVIAISSASQGYKFTNLQIVAAPGLGQAAVLLKTGGTIPP
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