NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315283_10070763

Scaffold Ga0315283_10070763


Overview

Basic Information
Taxon OID3300032164 Open in IMG/M
Scaffold IDGa0315283_10070763 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3576
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001288Metagenome / Metatranscriptome730Y

Sequences

Protein IDFamilyRBSSequence
Ga0315283_100707631F001288N/ARALNDPLRSMNAAAQWISALPTSDALAIQKEALEVVANFPGPRRIVGPAQAEALLRIDARLEPVLAQLAQQYTANYQRSTNVETRLWHGVFDLVKAFSAAYGAALRAGYPRAEQKRWRVLLPWILVRLVHYKGIDGKFRLFRYGNWIPAQWREFHELYEFARMRGWQREQLAYGAGTFSRPGVTVEQEYLKMLLLMRLDSGNFTPDQVEWVAKQLDAWASSLTLVPPPGPGANFFVDLTSSQGLRRQDRSPAGGRLLFLDASPIYTQIVERMRWLPEHDDETPKPDDLPPREQRLLLMRLASLYGPDAIAQSPRATRFMTEGEVRVVIGLGPLTRAVAEIERLPEPARTPGVAASFDEITEMIVPNAGPETISRRIRGSTWKMEDRSDTGCRLTAPEKQAPAKLGEILALKEGETWALAVVRRMQRHQVDETTVGVEIIGRRLVRVLLRNWVAPVDAGRAHADRPFFGIYLPAHPENRQMAQRSLIGPDDRFVTGGMVELDTGSARYLIRFTQTLERQPGWAWTLFSAVRKLTP
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