NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10000003

Scaffold Ga0315268_10000003


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10000003 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)315025
Total Scaffold Genes357 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)235 (65.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009732Metagenome313Y
F097611Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315268_10000003285F009732GGAGLRKNLSETQFDDLKNKSFELFRVVEMLCEVCEKPLNTKEKLLRTIQIQSREDYLNLLNRARVHDRAEVDVDDGKIYFYDHDFPGDIHQECIEKL
Ga0315268_10000003338F097611N/AVSEKEQTKQGSQNTEEKAIIVVSDLSPSVVELLKEFRRTSGARDIPRVVEDITFSIFELMKLVNTSRDPRIYPQDAVRVMDTVKAVLEKFTRFGKPQQLEEAQKDSKTS
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