NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10106853

Scaffold Ga0315268_10106853


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10106853 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2640
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012433Metagenome / Metatranscriptome280N
F019102Metagenome231Y
F045612Metagenome152Y
F073252Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_101068531F073252N/AGEELVPFSGVFKTPTSITYVARADTTARADFDAKFYDILEQLYRDPDLASYLTDHSNITFYVAKVTGDNPAVIGQNRTWSRAMTLDITATAKK
Ga0315268_101068533F045612GAGGMSSLKWLEAEGYIEKFYDSNGDLCVRVCEGAEDCEV
Ga0315268_101068534F012433AGAAGMSADQVAELQERLSVVREAIARIEERQQSIISVIERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFSR
Ga0315268_101068537F019102N/AMSISLDEELNSAFIAPEKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQAELGNA
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