NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315276_11172727

Scaffold Ga0315276_11172727


Overview

Basic Information
Taxon OID3300032177 Open in IMG/M
Scaffold IDGa0315276_11172727 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021887Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0315276_111727272F021887N/AVRLTYYNAMVVQRARGVQDAQPLPLRPLVAEFTATFGVGWGPVTRRKHRDDFERFLAWLEASGIEPTTEALSFATLATYVDDLRHRPRVRGVWRGSPDARTRSLAAGPAETLSANSVNAYVRPLRSLVIWALDEGYVASNPFRRFRRRAALDPLLPTEETPTKGATLSDLWALEAGCAGERPRDLRDRAIVAILVTTAARNSAVRLLRLDDVDAERSLLRF
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