NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310889_10202111

Scaffold Ga0310889_10202111


Overview

Basic Information
Taxon OID3300032179 Open in IMG/M
Scaffold IDGa0310889_10202111 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029859Metagenome / Metatranscriptome187Y
F034838Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0310889_102021111F034838N/AAFAGPPVLQGMLWAALLWCVPEVIIAPMLGVEVFSTALGGVPAALRALLGYLVYGATLGSVAGAVQPEDRYASHA
Ga0310889_102021112F029859AGGAGMLTRVVTGQYCSVHQLLFVSALQAWLSVSPAHIAQTYGDAMRVVEAPCPRCLALTQSALHRQFPALYAPASRGS

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